| # | Team | Kopfbälle |
|---|---|---|
| 1 | FC Ingolstadt | 1411 |
| 2 | Rot-Weiss Essen | 1409 |
| 3 | MSV Duisburg | 1294 |
| 4 | FC Hansa Rostock | 1274 |
| 5 | SSV Jahn Regensburg | 1265 |
| 6 | 1860 München | 1261 |
| 7 | Alemannia Aachen | 1250 |
| 8 | SV Wehen Wiesbaden | 1220 |
| 9 | VfL Osnabrück | 1168 |
| 10 | FC Erzgebirge Aue | 1125 |
| 11 | Energie Cottbus | 1090 |
| 12 | SSV Ulm | 1086 |
| 13 | TSV Havelse | 1080 |
| 14 | Waldhof Mannheim | 1078 |
| 15 | 1. FC Schweinfurt 05 | 1050 |
| 16 | 1. FC Saarbrücken | 1044 |
| 17 | FC Viktoria Köln | 998 |
| 18 | TSG Hoffenheim II | 952 |
| 19 | SC Verl | 937 |
| 20 | Stuttgart II | 884 |
| 21 | SpVgg Greuther Fürth | 71 |