| # | Team | Goals |
|---|---|---|
| 1 |  Rodina Moskva | 58(4) |
| 2 |  FC Ural Yekaterinburg | 51(1) |
| 3 |  FC Rotor Volgograd | 47(3) |
| 4 |  FC Kamaz Naberezhnye Chelny | 46(5) |
| 5 |  Spartak Kostroma | 46(6) |
| 6 |  Fakel Voronezh | 44(2) |
| 7 |  Arsenal Tula | 42(4) |
| 8 |  FK Chelyabinsk | 42(5) |
| 9 |  Neftekhimik | 40(2) |
| 10 |  Chernomorets Novorossijsk | 37(4) |
| 11 |  FC Ska-Khabarovsk | 37(5) |
| 12 |  FK Yenisey Krasnoyarsk | 37(6) |
| 13 |  Torpedo Moscow | 37(2) |
| 14 |  Volga Ulyanovsk | 35(1) |
| 15 |  FC Shinnik Yaroslavl | 34 |
| 16 |  FK Ufa | 32(2) |
| 17 |  Chaika Peschanokopskoe | 30(3) |
| 18 |  Sokol Saratov | 16(1) |