| # | Player | Team | Penalty goals |
|---|---|---|---|
| 1 |  Phrangki Buam |  Shillong Lajong FC | 3(3) |
| 2 | Marcus Joseph |  Dempo | 2(2) |
| 3 | Djakaridja Junior Traoré |  Real Kashmir | 2(2) |
| 4 | Zomuansanga |  Aizawl FC | 2(2) |
| 5 |  Jonathan Fernandes |  Rajasthan Club | 1(1) |
| 6 | Christian Moses | Real Kashmir | 1(1) |
| 7 | Mirjalol Kasimov |  Gokulam Kerala FC | 1(1) |
| 8 |  Hugo Díaz |  Diamond Harbour FC | 1(1) |
| 9 | E. Mylliempdah | Shillong Lajong FC | 1(1) |
| 10 | João Vitor De Paula Morais |  Chanmari West | 1(1) |
| 11 | Richmond Kwasi Owusu | Dempo | 1(1) |
| 12 | Lamlallian S.T. | Shillong Lajong FC | 1(1) |
| 13 | Richmond Owusu | Dempo | 1(1) |