| 1 |  FK Krasnodar | 27(3) |
| 2 |  FC Spartak Moscow | 24(2) |
| 3 |  Zenit | 23(4) |
| 4 |  CSKA Moscow | 19(2) |
| 5 |  FC Dinamo Moscow | 19 |
| 6 |  Lokomotiv | 17(5) |
| 7 |  Irkutsk | 15(1) |
| 8 |  FC Krylia Sovetov Samara | 14 |
| 9 |  FK Makhachkala | 13(2) |
| 10 |  FK Rostov | 11 |
| 11 | Cherepovets | 10(1) |
| 12 |  PFC Sochi | 8(1) |
| 13 |  FC Baltika Kaliningrad | 8 |
| 14 |  Arsenal Tula | 8 |
| 15 |  Veles | 8(1) |
| 16 |  Kuban Kholding | 8(1) |
| 17 |  Republican FC Akhmat Grozny | 8(1) |
| 18 | Kristall MEZ Borisoglebsk | 8 |
| 19 |  Luki-Energiya | 7(1) |
| 20 | FC Amkal Moscow | 7 |
| 21 | Stroitel Kamensk-Shakhtinsky | 7 |
| 22 | Broke Boys | 7 |
| 23 |  FC Orenburg | 7 |
| 24 |  Torpedo Moscow | 7(1) |
| 25 | PSK Dinskoy Rayon | 6 |
| 26 |  Akron | 6(4) |
| 27 | Astrakhan | 6(1) |
| 28 |  Tyumen | 5 |
| 29 | Zvezda St. Petersburg | 5 |
| 30 |  FC Rubin Kazan | 5(1) |
| 31 |  FC Shinnik Yaroslavl | 5 |
| 32 | FK Fankom | 5 |
| 33 |  Legion Dynamo | 4(1) |
| 34 |  Volga Olimpiets | 4(1) |
| 35 |  Fakel Voronezh | 4 |
| 36 | FK Ilpar | 4 |
| 37 |  Neftekhimik | 4 |
| 38 |  Volgar Astrakhan | 4 |
| 39 |  Salyut-Belgorod | 4 |
| 40 |  FC Kamaz Naberezhnye Chelny | 4 |
| 41 |  Chernomorets Novorossijsk | 3 |
| 42 |  FK Ufa | 3(1) |
| 43 |  Znamya Noginsk | 3 |
| 44 |  Rodina Moskva | 3 |
| 45 |  Znamya Truda | 3(1) |
| 46 |  FK Yenisey Krasnoyarsk | 3 |
| 47 |  FK Chelyabinsk | 3(1) |
| 48 |  Sokol Saratov | 2 |
| 49 |  Orel | 2 |
| 50 | FK Kosmos Dolgoprudny | 2(1) |
| 51 | FK Temp Barnaul | 2 |
| 52 | Uralets Nizhny Tagil | 2 |
| 53 | FK Spartak Tambov | 2 |
| 54 |  FC Ural Yekaterinburg | 2 |
| 55 | Dynamo Vologda | 2 |
| 56 |  Tekstilshchik Ivanovo | 2 |
| 57 |  Nosta | 2 |
| 58 |  Dinamo Stavropol | 2(1) |
| 59 |  Volga Ulyanovsk | 2 |
| 60 |  Chaika Peschanokopskoe | 2(1) |
| 61 |  FC Murom | 2 |
| 62 |  Alania Vladikavkaz | 2 |
| 63 | RW Challenge | 1 |
| 64 |  FK Angusht Nazran | 1 |
| 65 | FK Shumbrat Saransk | 1 |
| 66 |  Dinamo Barnaul | 1 |
| 67 | Kristall | 1 |
| 68 |  Amkar Perm | 1 |
| 69 |  Druzhba Maikop | 1 |
| 70 |  Metallurg Lipetsk | 1 |
| 71 | Drots Moscow FC | 1 |
| 72 |  Zenit Penza | 1 |
| 73 |  Dynamo Kirov | 1 |
| 74 | Volna Kovernino | 1 |
| 75 | Kvant | 1 |
| 76 |  Chertanovo | 1 |
| 77 |  FC Avangard Kursk | 1 |
| 78 |  Khimik Dzerzhinsk | 1 |
| 79 |  Kuban Krasnodar | 1 |
| 80 |  FC Rotor Volgograd | 1 |
