| 1 |  Izberbash | 8 |
| 2 | Stroitel Kamensk-Shakhtinsky | 6 |
| 3 |  FC Spartak Moscow | 5(1) |
| 4 |  Rodina Moskva | 5 |
| 5 |  Znamya Noginsk | 5 |
| 6 |  Kaluga | 5 |
| 7 |  FC 10 | 4 |
| 8 | Kristall MEZ Borisoglebsk | 4 |
| 9 |  FK Rostov | 4 |
| 10 |  FK Chita | 3 |
| 11 | FK Temp Barnaul | 3(1) |
| 12 |  Nosta | 3 |
| 13 | Drots Moscow FC | 3 |
| 14 |  Torpedo Vladimir | 3 |
| 15 |  SKA Rostov | 3(1) |
| 16 |  Chertanovo | 3 |
| 17 |  Tosno | 3 |
| 18 |  Alania Vladikavkaz | 3 |
| 19 |  Sokol Saratov | 3 |
| 20 |  Spartak Nal'chik | 3 |
| 21 | FK Ilpar | 2 |
| 22 | Dinamo St. Petersburg | 2 |
| 23 |  Khimik Dzerzhinsk | 2 |
| 24 | FK Kosmos Dolgoprudny | 2 |
| 25 |  Luki-Energiya | 2 |
| 26 |  Torpedo Miass | 2 |
| 27 |  Dynamo Stavropol | 2 |
| 28 | Volna Kovernino | 2(1) |
| 29 |  Sibir Novosibirsk | 2 |
| 30 |  Dynamo Kirov | 2 |
| 31 |  Zenit Penza | 2 |
| 32 |  Ryazan | 2 |
| 33 | Dynamo Vologda | 2(2) |
| 34 |  Dinamo Barnaul | 2 |
| 35 |  Volgar Astrakhan | 2 |
| 36 | Kristall | 2 |
| 37 | Broke Boys | 2 |
| 38 |  Amkar Perm | 2 |
| 39 |  FC Krylia Sovetov Samara | 2 |
| 40 | FK Spartak Tambov | 1 |
| 41 | Nart Cherkessk | 1 |
| 42 | Anri Vladivostok | 1 |
| 43 | FK Shumbrat Saransk | 1 |
| 44 |  Bomik Tsivilsk | 1 |
| 45 |  Zenit | 1 |
| 46 |  CSKA Moscow | 1 |
| 47 |  Lokomotiv | 1 |
| 48 |  FC Dinamo Moscow | 1 |
| 49 |  FC Saturn Ramenskoe | 1 |
| 50 |  Republican FC Akhmat Grozny | 1 |
| 51 |  Anzhi | 1 |
| 52 |  FC Avangard Kursk | 1(1) |
| 53 | Astrakhan | 1 |
| 54 |  FC Orenburg | 1 |
| 55 |  Mashuk-KMV | 1 |
| 56 |  Tyumen | 1 |
| 57 |  Irtysh | 1 |
| 58 |  FK Krasnodar | 1 |
| 59 |  Zenit Izhevsk | 1 |
| 60 | Zvezda St. Petersburg | 1(1) |
| 61 |  FK Makhachkala | 1 |
