| # | Team | Penalty goals |
|---|---|---|
| 1 |  Lokomotiv | 5 |
| 2 |  Zenit | 4 |
| 3 |  Akron | 4 |
| 4 |  FK Krasnodar | 3 |
| 5 |  CSKA Moscow | 2 |
| 6 |  FC Spartak Moscow | 2 |
| 7 |  FK Makhachkala | 2 |
| 8 |  FK Kosmos Dolgoprudny | 1 |
| 9 |  Kuban Kholding | 1 |
| 10 |  Veles | 1 |
| 11 |  Luki-Energiya | 1 |
| 12 | Cherepovets | 1 |
| 13 |  Chaika Peschanokopskoe | 1 |
| 14 |  Legion Dynamo | 1 |
| 15 |  Volga Olimpiets | 1 |
| 16 |  PFC Sochi | 1 |
| 17 | Irkutsk | 1 |
| 18 |  FK Ufa | 1 |
| 19 |  Znamya Truda | 1 |
| 20 |  Dinamo Stavropol | 1 |
| 21 |  FK Chelyabinsk | 1 |
| 22 | Astrakhan | 1 |
| 23 |  Republican FC Akhmat Grozny | 1 |
| 24 |  FC Rubin Kazan | 1 |
| 25 |  Torpedo Moscow | 1 |