| 1 |  FK Krasnodar | 127 |
| 2 |  FC Spartak Moscow | 118 |
| 3 |  FC Dinamo Moscow | 111 |
| 4 |  CSKA Moscow | 91 |
| 5 |  Zenit | 87 |
| 6 |  FC Orenburg | 77 |
| 7 |  FC Baltika Kaliningrad | 75 |
| 8 |  Lokomotiv | 69 |
| 9 |  FK Makhachkala | 66 |
| 10 |  FC Krylia Sovetov Samara | 65 |
| 11 |  FK Rostov | 60 |
| 12 |  FC Rubin Kazan | 56 |
| 13 |  Akron | 54 |
| 14 |  Republican FC Akhmat Grozny | 48 |
| 15 |  Drots Moscow FC | 35 |
| 16 | FC Amkal Moscow | 34 |
| 17 |  Kuban Kholding | 34 |
| 18 | Stroitel Kamensk-Shakhtinsky | 34 |
| 19 |  PFC Sochi | 34 |
| 20 |  Volga Olimpiets | 33 |
| 21 |  Neftekhimik | 31 |
| 22 |  Veles | 27 |
| 23 | Broke Boys | 27 |
| 24 |  Fakel Voronezh | 25 |
| 25 |  Salyut-Belgorod | 25 |
| 26 | Irkutsk | 25 |
| 27 | FK Temp Barnaul | 24 |
| 28 |  Znamya Truda | 23 |
| 29 |  FC Kamaz Naberezhnye Chelny | 22 |
| 30 | Astrakhan | 21 |
| 31 |  FK Chelyabinsk | 20 |
| 32 |  Rodina Moskva | 20 |
| 33 | PSK Dinskoy Rayon | 20 |
| 34 |  Mashuk-KMV | 19 |
| 35 |  Tekstilshchik Ivanovo | 18 |
| 36 |  Volgar Astrakhan | 18 |
| 37 |  Chernomorets Novorossijsk | 18 |
| 38 |  Arsenal Tula | 18 |
| 39 |  Torpedo Moscow | 18 |
| 40 | FK Spartak Tambov | 16 |
| 41 |  Dinamo Stavropol | 16 |
| 42 | Kristall MEZ Borisoglebsk | 16 |
| 43 | FK Ilpar | 15 |
| 44 |  FK Yenisey Krasnoyarsk | 13 |
| 45 |  Nosta | 13 |
| 46 | Dinamo St. Petersburg | 13 |
| 47 | Uralets Nizhny Tagil | 12 |
| 48 |  Sokol Saratov | 12 |
| 49 | Zvezda St. Petersburg | 12 |
| 50 |  Irtysh | 11 |
| 51 |  Chaika Peschanokopskoe | 11 |
| 52 |  Luki-Energiya | 10 |
| 53 |  Legion Dynamo | 10 |
| 54 |  Torpedo Miass | 10 |
| 55 |  Kaluga | 10 |
| 56 |  Amkar Perm | 10 |
| 57 |  Kuban Krasnodar | 9 |
| 58 |  FK Ufa | 9 |
| 59 | FK Kosmos Dolgoprudny | 8 |
| 60 |  FC Ural Yekaterinburg | 8 |
| 61 |  FC Saturn Ramenskoe | 8 |
| 62 |  Sibir Novosibirsk | 8 |
| 63 |  Tyumen | 8 |
| 64 | FK Shumbrat Saransk | 8 |
| 65 |  Torpedo Vladimir | 8 |
| 66 |  Metallurg Lipetsk | 7 |
| 67 |  FC Avangard Kursk | 7 |
| 68 |  Dinamo Barnaul | 7 |
| 69 |  Druzhba Maikop | 6 |
| 70 |  Orel | 6 |
| 71 |  Dinamo Vladivostok | 6 |
| 72 |  FC Rotor Volgograd | 6 |
| 73 | FK Pobeda Junior | 6 |
| 74 |  FC Ska-Khabarovsk | 5 |
| 75 | Volna Kovernino | 5 |
| 76 | Kristall | 5 |
| 77 |  FK Angusht Nazran | 5 |
| 78 |  Znamya Noginsk | 4 |
| 79 |  Ryazan | 4 |
| 80 | Kvant | 4 |
| 81 | RW Challenge | 3 |
| 82 | Nart Cherkessk | 3 |
| 83 | FC Tver | 3 |
| 84 |  Chertanovo | 3 |
| 85 |  Khimik Dzerzhinsk | 3 |
| 86 |  Spartak Kostroma | 3 |
| 87 |  FC Shinnik Yaroslavl | 2 |
| 88 | Anri Vladivostok | 1 |
| 89 |  Volga Ulyanovsk | 1 |
| 90 |  Spartak Nal'chik | 1 |
