| # | Team | Penalty goals |
|---|---|---|
| 1 |  Isidro Metapán | 11 |
| 2 |  FAS | 10 |
| 3 |  Firpo | 9 |
| 4 |  Alianza | 6 |
| 5 |  Municipal Limeño | 6 |
| 6 |  D Platense Zacatecoluca | 5 |
| 7 |  Inter F.A | 5 |
| 8 |  Zacatecoluca | 5 |
| 9 |  Águila | 4 |
| 10 |  CD Cacahuatique | 4 |
| 11 |  Fuerte San Francisco | 3 |
| 12 |  CD Hercules | 3 |