| # | Team | Penalty goals |
|---|---|---|
| 1 | Atletico Junior Barranquilla | 7 |
| 2 | América de Cali | 5 |
| 3 | Once Caldas | 4 |
| 4 | Llaneros FC | 4 |
| 5 | Deportes Tolima | 4 |
| 6 | Deportivo Pasto | 4 |
| 7 | Cucuta Deportivo | 4 |
| 8 | Jaguares de Córdoba | 3 |
| 9 | Fortaleza CEIF | 3 |
| 10 | Rionegro | 3 |
| 11 | 3 | |
| 12 | Millonarios | 3 |
| 13 | 3 | |
| 14 | Deportivo Cali | 3 |
| 15 | Atlético Nacional | 3 |
| 16 | Internacional de Bogota | 2 |
| 17 | Alianza FC | 2 |
| 18 | Deportivo Pereira | 2 |