| # | Team | Yellow cards |
|---|---|---|
| 1 | Wigan Athletic | 18 |
| 2 | Barnsley | 18 |
| 3 | Mansfield Town | 16 |
| 4 | Bradford City | 16 |
| 5 | Notts County | 16 |
| 6 | Leyton Orient | 15 |
| 7 | Luton Town | 15 |
| 8 | Cambridge United | 14 |
| 9 | Doncaster Rovers | 14 |
| 10 | Sheffield Wednesday | 14 |
| 11 | Leicester | 14 |
| 12 | Milton Keynes Dons | 13 |
| 13 | Stevenage Borough | 13 |
| 14 | AFC Wimbledon | 13 |
| 15 | Bromley | 12 |
| 16 | Blackpool | 11 |
| 17 | Oxford United | 11 |
| 18 | Burton | 11 |
| 19 | Wycombe Wanderers | 9 |
| 20 | Plymouth Argyle | 9 |
| 21 | Peterborough XI | 8 |
| 22 | Huddersfield | 8 |
| 23 | Reading | 8 |
| 24 | Stockport County | 7 |