| # | Team | Yellow cards |
|---|---|---|
| 1 | Montedio Yamagata | 5 |
| 2 | Oita Trinita | 4 |
| 3 | Vissel Kobe | 4 |
| 4 | Fujieda MYFC | 3 |
| 5 | Kashiwa Reysol | 2 |
| 6 | Kyoto Sanga | 2 |
| 7 | Ventforet Kofu | 2 |
| 8 | Mito Hollyhock | 2 |
| 9 | Verspah Oita | 2 |
| 10 | Senshu Univ | 1 |
| 11 | Tochigi City | 1 |
| 12 | Tegevajaro Miyazaki | 1 |
| 13 | Iwaki FC | 1 |
| 14 | Reinmeer Aomori | 1 |
| 15 | FC Imabari | 1 |
| 16 | Machida Zelvia | 1 |
| 17 | Tokushima Vortis | 1 |
| 18 | Avispa Fukuoka | 1 |
| 19 | Gamba Osaka | 1 |