| # | Player | Team | Penalty goals |
|---|---|---|---|
| 1 | Klaus | SpVgg Greuther Fürth | 2(2) |
| 2 | Tolcay Cigerci | Energie Cottbus | 2(2) |
| 3 | Mehmet Aydin | Eintracht Braunschweig | 2(2) |
| 4 | Lars Gindorf | Hannover | 2(2) |
| 5 | Budu Zivzivadze | 1. FC Heidenheim 1846 | 1(1) |
| 6 | Robert Glatzel | Wolfsburg | 1(1) |
| 7 | Brekalo | Hertha | 1(1) |
| 8 | Reese | Wolfsburg | 1(1) |
| 9 | Joel Grodowski | Arminia Bielefeld | 1(1) |
| 10 | Robin Meißner | VfL Osnabruck | 1(1) |
| 11 | Phil Harres | Holstein Kiel | 1(1) |
| 12 | Milan Smit | SV Darmstadt 98 | 1(1) |